Ralf Koebnik
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Publications of Ralf Koebnik (35 listed):
Molecular Plant Pathology (2022) 23, 597-621
Nay C. Dia, Lucas Morinière, Bart Cottyn, Eduardo Bernal, Jonathan M. Jacobs, Ralf Koebnik, Ebrahim Osdaghi, Neha Potnis and Joël F. Pothier (2022)
Xanthomonas hortorum – beyond gardens: Current taxonomy, genomics, and virulence repertoires
Phytopathology (2021) 111, 611-616
Ralf Koebnik, Daiva Burokiene, Claude Bragard, Christine Chang, Marion Fischer-Le Saux, Roland Kölliker, Jillian M. Lang, Jan E. Leach, Emily K. Luna, Perrine Portier, Angeliki Sagia, Janet Ziegle, Stephen P. Cohen and Jonathan M. Jacobs (2021)
The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 Xanthomonads
Plant Disease (2021) 105 (9 - 1474)
Kossi Kini, Raoul Agnimonhan, Rachelle Dossa, Drissa Silué and Ralf Koebnik (2021)
Genomics-informed multiplex PCR scheme for rapid identification of rice-associated bacteria of the genus Pantoea
Phytopathology (2020) 110, 1500-1502
Kossi Kini, Pierre Lefeuvre, Lucie Poulin, Drissa Silué and Ralf Koebnik (2020)
Genome resources of three West African strains of Pantoea ananatis causing bacterial blight and grain discoloration of rice
Plant Disease (2020) 104, 13-15
Verónica Roman-Reyna, Emily K. Luna, Céline Pesce, Taca Vancheva, Christine Chang, Janet Ziegle, Claude Bragard, Ralf Koebnik, Jillian M. Lang, Jan E. Leach and Jonathan M. Jacobs (2020)
Genome resource of barley bacterial blight and leaf streak pathogen Xanthomonas translucens pv. translucens strain UPB886
Plant Disease (2020) 104, 1011-1012
Stephen P. Cohen, Emily K. Luna, Jillian M. Lang, Janet Ziegle, Christine Chang, Jan E. Leach, Marion Fischer Le-Saux, Perrine Portier, Ralf Koebnik and Jonathan M. Jacobs (2020)
High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing
PLoS ONE (2020) 15 (4 - e0232115)
Martine Bangratz, Issa Wonni, Kossi Kini, Moussa Sondo, Christophe Brugidou, Gilles Béna, Fatoumata Gnacko, Mariam Barro, Ralf Koebnik, Drissa Silué and Charlotte Tollenaere (2020)
Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso
Phytopathology (2019) 109, 172-174
R.P.P. Almeida, L. De La Fuente, R. Koebnik, J.R.S. Lopes, S. Parnell and H. Scherm (2019)
Addressing the new global threat of Xylella fastidiosa
Phytopathology (2019) 109, 859-869
Leidy Rache, Laurence Blondin, Carolina Flores, Cesar Trujillo, Boris Szurek, Silvia Restrepo, Ralf Koebnik, Adriana Bernal and Christian Vernière (2019)
An optimized microsatellite scheme for assessing populations of Xanthomonas phaseoli pv. manihotis
Applied and Environmental Microbiology (2019) 85 (20 - e01518-19)
Moein Khojasteh, S. Mohsen Taghavi, Pejman Khodaygan, Habiballah Hamzehzarghani, Gongyou Chen, Claude Bragard, Ralf Koebnik and Ebrahim Osdaghi (2019)
Molecular typing reveals high genetic diversity of Xanthomonas translucens strains infecting small-grain cereals in Iran
Plant Disease (2019) 103, p. 2940 (Klass et al.)
T.L. Klass, J.J. Long, J.A. Summers, V. Roman-Reyna, R. Koebnik, J.M. Jacobs and F. Peduto Hand (2019)
First report of bacterial blight of peony caused by Xanthomonas hortorum in Ohio
Journal of General Plant Pathology (2019) 85, 424-427
Kossi Kini, Rachelle Dossa, Bernadin Dossou, Mariame Mariko, Ralf Koebnik and Drissa Silué (2019)
A semi-selective medium to isolate and identify bacteria of the genus Pantoea
The Plant Pathology Journal (2018) 34, 1-10
Tanahiri García-González, Hilda Karina Sáenz-Hidalgo, Hilda Victoria Silva-Rojas, Carlos Morales-Nieto, Taca Vancheva, Ralf Koebnik and Graciela Dolores Avila-Quezada (2018)
Enterobacter cloacae, an emerging plant-pathogenic bacterium affecting chili pepper seedlings
Plant Pathology (2018) 67, 957-970
E. Osdaghi, M. Ansari, S.M. Taghavi, S. Zarei, R. Koebnik and J.R. Lamichhane (2018)
Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran
Plant Pathology (2018) 67, 1601-1611
E. Osdaghi, S.M. Taghavi, R. Koebnik and J.R. Lamichhane (2018)
Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran
Plant Biotechnology Journal (2017) 15, 306-317
Servane Blanvillain-Baufumé, Maik Reschke, Montserrat Solé, Florence Auguy, Hinda Doucoure, Boris Szurek, Donaldo Meynard, Murielle Portefaix, Sébastien Cunnac, Emmanuel Guiderdoni, Jens Boch and Ralf Koebnik (2017)
Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors
Phytopathology (2017) 107, 519-527
Paul A. Langlois, Jacob Snelling, John P. Hamilton, Claude Bragard, Ralf Koebnik, Valérie Verdier, Lindsay R. Triplett, Jochen Blom, Ned A. Tisserat and Jan E. Leach (2017)
Characterization of the Xanthomonas translucens complex using draft genomes, comparative genomics, phylogenetic analysis, and diagnostic LAMP assays
Annual Review of Phytopathology (2016) 54, 163-187
Marie-Agnès Jacques, Matthieu Arlat, Alice Boulanger, Tristan Boureau, Sébastien Carrère, Sophie Cesbron, Nicolas W.G. Chen, Stéphane Cociancich, Armelle Darrasse, Nicolas Denancé, Marion Fischer-Le Saux, Lionel Gagnevin, Ralf Koebnik, Emmanuelle Lauber, Laurent D. Noël, Isabelle Pieretti, Perrine Portier, Olivier Pruvost, Adrien Rieux, Isabelle Robène, Monique Royer, Boris Szurek, Valérie Verdier and Christian Vernière (2016)
Using ecology, physiology, and genomics to understand host specificity in Xanthomonas
The Plant Journal (2016) 88, 43-55
Mathilde Hutin, Stella Césari, Véronique Chalvon, Corinne Michel, Tuan Tu Tran, Jens Boch, Ralf Koebnik, Boris Szurek and Thomas Kroj (2016)
Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases
Plant Disease (2015) 99, p. 1853 (Tran et al.)
T.T. Tran, N.V. Nga, P.T. Ngan, N.T. Hong, B. Szurek, R. Koebnik, L.H. Ham, H.V. Cuong and S. Cunnac (2015)
Confirmation of bacterial leaf streak of rice caused by Xanthomonas oryzae pv. oryzicola in Vietnam
The Plant Journal (2015) 84, 694-703
Mathilde Hutin, François Sabot, Alain Ghesquière, Ralf Koebnik and Boris Szurek (2015)
A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice
Applied and Environmental Microbiology (2015) 81, 688-698
L. Poulin, P. Grygiel, M. Magne, L. Gagnevin, L.M. Rodriguez-R., N. Forero Serna, S. Zhao, M. El Rafii, S. Dao, C. Tekete, I. Wonni, O. Koita, O. Pruvost, V. Verdier, C. Vernière and R. Koebnik (2015)
New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae
PLoS ONE (2014) 9 (6 - e98129)
Olivier Pruvost, Maxime Magne, Karine Boyer, Alice Leduc, Christophe Tourterel, Christine Drevet, Virginie Ravigné, Lionel Gagnevin, Fabien Guérin, Frédéric Chiroleu, Ralf Koebnik, Valérie Verdier and Christian Vernière (2014)
A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage
Plant Disease (2014) 98, p. 1426 (Afolabi et al.)
O. Afolabi, B. Milan, R. Amoussa, R. Koebnik, L. Poulin, B. Szurek, G. Habarugira, J. Bigirimana and D. Silue (2014)
First report of Xanthomonas oryzae pv. oryzicola causing bacterial leaf streak of rice in Burundi
Plant Disease (2014) 98, p. 1579 (Afolabi et al.)
O. Afolabi, B. Milan, L. Poulin, J. Ongom, B. Szurek, R. Koebnik and D. Silue (2014)
First report of Xanthomonas oryzae pv. oryzicola causing bacterial leaf streak of rice in Uganda
Phytopathology (2014) 104, 520-531
I. Wonni, B. Cottyn, L. Detemmerman, S. Dao, L. Ouedraogo, S. Sarra, C. Tekete, S. Poussier, R. Corral, L. Triplett, O. Koita, R. Koebnik, J. Leach, B. Szurek, M. Maes and V. Verdier (2014)
Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity
Plant Disease (2014) 98, p. 1423 (Poulin et al.)
L. Poulin, H. Raveloson, M. Sester, L.-M. Raboin, D. Silué, R. Koebnik and B. Szurek (2014)
Confirmation of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Madagascar
New Phytologist (2013) 200, 808-819
Jana Streubel, Céline Pesce, Mathilde Hutin, Ralf Koebnik, Jens Boch and Boris Szurek (2013)
Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae
Molecular Plant Pathology (2013) 14, 84-95
Luisa F. Castiblanco, Juliana Gil, Alejandro Rojas, Daniela Osorio, Sonia Gutiérrez, Alejandra Muñoz-Bodnar, Alvaro L. Perez-Quintero, Ralf Koebnik, Boris Szurek, Camilo López, Silvia Restrepo, Valérie Verdier and Adriana J. Bernal (2013)
TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants
PLoS ONE (2013) 8 (7 - e68464)
Alvaro L. Pérez-Quintero, Luis M. Rodriguez-R, Alexis Dereeper, Camilo López, Ralf Koebnik, Boris Szurek and Sebastien Cunnac (2013)
An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains
Phytopathology (2012) 102, 948-956
Shuai Zhao, Lucie Poulin, Luis M. Rodriguez-R., Natalia Forero Serna, Shu-Yan Liu, Issa Wonni, Boris Szurek, Valérie Verdier, Jan E. Leach, Yong-Qiang He, Jia-Xun Feng and Ralf Koebnik (2012)
Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola
Molecular Plant Pathology (2012) 13, 288-302
Ahmed Hajri, Chrystelle Brin, Shuai Zhao, Perrine David, Jia-Xun Feng, Ralf Koebnik, Boris Szurek, Valérie Verdier, Tristan Boureau and Stephane Poussier (2012)
Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae
Molecular Plant-Microbe Interactions (2011) 24, 1102-1113
Yanhua Yu, Jana Streubel, Sandrine Balzergue, Antony Champion, Jens Boch, Ralf Koebnik, Jiaxun Feng, Valérie Verdier and Boris Szurek (2011)
Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene
Molecular Plant Pathology (2009) 10, 749-766
Frank F. White, Neha Potnis, Jeffrey B. Jones and Ralf Koebnik (2009)
The type III effectors of Xanthomonas
Molecular Plant-Microbe Interactions (2007) 20, 559-567
Ernst Weber, Carolin Berger, Ulla Bonas and Ralf Koebnik (2007)
Refinement of the Xanthomonas campestris pv. vesicatoria hrpD and hrpE operon structure
